inputDirectory: input_files_1dqz
// e.g., input directory: ./input_files/

inputDataDirectory: input_data_files
//e.g., Input Data Directory: ./input_files/input_data_files/

inputParameterDirectory: input_parameter_files
//e.g., Input Parameter Directory: ./input_files/input_parameter_files/


outputDirectory: output_files

logDirectory: log_files


//input data directory must contain RDC, NOE information, dihedral angle restraints from TALOS+ etc.

//program parameter directory must contain:
//    (1) the set of parameters to be used for the program, and 
//    (2) the RDC scaling factor information (i.e., how your RDCs are mutually comparable)

RDC and CSA Files in Medium1: rdc_medium1.txt
RDC and CSA Files in Medium2: null
//RDC and CSA Files in Medium2: rdc_medium2.txt

programParameterFile: parameter.txt

SSeInfoFile: sse.txt

sequenceFile: seq.txt

loopConfigurationFile: loop.txt

dihedralRestraintFile: talos.txt

noeRestraintFile: noe.txt


// **** Warning:  not recommended to change the settings below **** //

bestFragmentPdbFile: solutionFragments.pdb

solutionTreeLogFile: solutionLog.txt

mostRecentFragmentCorrespondingToALeaf: mostRecentLeaf.pdb



