inputDirectory: input_files_1d3z
// e.g., input directory: ./input_files/

inputDataDirectory: input_data_files
//e.g., Input Data Directory: ./input_files/input_data_files/

inputParameterDirectory: input_parameter_files
//e.g., Input Parameter Directory: ./input_files/input_parameter_files/

//input data directory must contain RDC and CSA restraints, NOE information, Hbond information etc.

//program parameter directory must contain:
//    (1) the set of parameters to be used for the program, and 
//    (2) the RDC scaling factor.

RDC and CSA Files in Medium1: rdc_medium1.txt
//RDC and CSA Files in Medium2: rdc_medium2.txt
RDC and CSA Files in Medium2: null

programParameterFile: parameter.txt
SSeInfoFile: sse.txt

// Note: For now as a design decision we keep the RDC scaling information in the parameter.txt

// System directories

// We are yet to use the constructs below. The rotamer library path is hardwired for now, which is fine for our purpose.

//rotamerLibrary: rotamerLibraryRichardsons
//rotamerFiles: [ ala.pdb arg.pdb asn.pdb asp.pdb cys.pdb gln.pdb glu.pdb gly.pdb his.pdb ile.pdb leu.pdb lys.pdb met.pdb phe.pdb pro.pdb ser.pdb thr.pdb trp.pdb tyr.pdb val.pdb ]
//rotamerFileFormat: old